J3_6HCQ_004

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GCAG*CGUAGC*GUCCGAC

Length

17 nucleotides

Bulged bases

6HCQ|1|51|A|1613

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|G|1545
6HCQ|1|51|C|1546
6HCQ|1|51|A|1547
6HCQ|1|51|G|1548
*
6HCQ|1|51|C|1580
6HCQ|1|51|G|1581
6HCQ|1|51|U|1582
6HCQ|1|51|A|1583
6HCQ|1|51|G|1584
6HCQ|1|51|C|1585
*
6HCQ|1|51|G|1608
6HCQ|1|51|U|1609
6HCQ|1|51|C|1610
6HCQ|1|51|C|1611
6HCQ|1|51|G|1612
6HCQ|1|51|A|1613
6HCQ|1|51|C|1614

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain R3

eL19

Chain g3

eL34

Chain j3

Ribosomal protein L37

Chain p3

eL43