J3_6HCQ_007

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

AAGGGAAGUCGG*CUG*CU

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|A|2844
6HCQ|1|51|A|2845
6HCQ|1|51|G|2846
6HCQ|1|51|G|2847
6HCQ|1|51|G|2848
6HCQ|1|51|A|2849
6HCQ|1|51|A|2850
6HCQ|1|51|G|2851
6HCQ|1|51|U|2852
6HCQ|1|51|C|2853
6HCQ|1|51|G|2854
6HCQ|1|51|G|2855
*
6HCQ|1|51|C|3837
6HCQ|1|51|U|3838
6HCQ|1|51|G|3839
*
6HCQ|1|51|C|3843
6HCQ|1|51|U|3844

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain V3

Ribosomal protein L23