J3_6HCQ_021

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GCCCGGAC*GGGUG*UUAGAUGUC

Length

22 nucleotides

Bulged bases

6HCQ|1|A2|G|1274, 6HCQ|1|A2|G|1507, 6HCQ|1|A2|U|1509

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|A2|G|1270
6HCQ|1|A2|C|1271
6HCQ|1|A2|C|1272
6HCQ|1|A2|C|1273
6HCQ|1|A2|G|1274
6HCQ|1|A2|G|1275
6HCQ|1|A2|A|1276
6HCQ|1|A2|C|1277
*
6HCQ|1|A2|G|1320
6HCQ|1|A2|G|1321
6HCQ|1|A2|G|1322
6HCQ|1|A2|U|1323
6HCQ|1|A2|G|1324
*
6HCQ|1|A2|U|1504
6HCQ|1|A2|U|1505
6HCQ|1|A2|A|1506
6HCQ|1|A2|G|1507
6HCQ|1|A2|A|1508
6HCQ|1|A2|U|1509
6HCQ|1|A2|G|1510
6HCQ|1|A2|U|1511
6HCQ|1|A2|C|1512

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain L2

eS10

Chain e2

uS14

Chain g2

Ribosomal protein S27a