J3_6HCQ_022

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UUCUUAG*CGAGACU*AGCAAUAA

Length

22 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|A2|U|1339
6HCQ|1|A2|U|1340
6HCQ|1|A2|C|1341
6HCQ|1|A2|U|1342
6HCQ|1|A2|U|1343
6HCQ|1|A2|A|1344
6HCQ|1|A2|G|1345
*
6HCQ|1|A2|C|1384
6HCQ|1|A2|G|1385
6HCQ|1|A2|A|1386
6HCQ|1|A2|G|1387
6HCQ|1|A2|A|1388
6HCQ|1|A2|C|1389
6HCQ|1|A2|U|1390
*
6HCQ|1|A2|A|1480
6HCQ|1|A2|G|1481
6HCQ|1|A2|C|1482
6HCQ|1|A2|A|1483
6HCQ|1|A2|A|1484
6HCQ|1|A2|U|1485
6HCQ|1|A2|A|1486
6HCQ|1|A2|A|1487

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain D2

eS1

Chain E2

uS3

Chain R2

Ribosomal protein S16

Chain S2

eS17

Chain V2

uS10

Chain e2

uS14