J3_6HCQ_024

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

6HCQ|1|A2|U|1477

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|A2|C|1391
6HCQ|1|A2|U|1392
6HCQ|1|A2|G|1393
6HCQ|1|A2|G|1394
6HCQ|1|A2|C|1395
*
6HCQ|1|A2|G|1450
6HCQ|1|A2|G|1451
6HCQ|1|A2|A|1452
6HCQ|1|A2|C|1453
6HCQ|1|A2|A|1454
6HCQ|1|A2|A|1455
6HCQ|1|A2|G|1456
*
6HCQ|1|A2|C|1470
6HCQ|1|A2|C|1471
6HCQ|1|A2|C|1472
6HCQ|1|A2|G|1473
6HCQ|1|A2|A|1474
6HCQ|1|A2|G|1475
6HCQ|1|A2|A|1476
6HCQ|1|A2|U|1477
6HCQ|1|A2|U|1478
6HCQ|1|A2|G|1479

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain E2

uS3

Chain G2

Ribosomal protein S5

Chain R2

Ribosomal protein S16

Chain S2

eS17

Chain V2

uS10

Chain d2

Ribosomal protein S28

Chain e2

uS14

Chain h2

RACK1