J3_6HCQ_025

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CAAGUCC*GGCCCAGCCCGUGGAC*GGUAG

Length

28 nucleotides

Bulged bases

6HCQ|1|51|U|200, 6HCQ|1|51|C|216, 6HCQ|1|51|C|217, 6HCQ|1|51|A|218, 6HCQ|1|51|G|219, 6HCQ|1|51|U|224

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|C|196
6HCQ|1|51|A|197
6HCQ|1|51|A|198
6HCQ|1|51|G|199
6HCQ|1|51|U|200
6HCQ|1|51|C|201
6HCQ|1|51|C|202
*
6HCQ|1|51|G|213
6HCQ|1|51|G|214
6HCQ|1|51|C|215
6HCQ|1|51|C|216
6HCQ|1|51|C|217
6HCQ|1|51|A|218
6HCQ|1|51|G|219
6HCQ|1|51|C|220
6HCQ|1|51|C|221
6HCQ|1|51|C|222
6HCQ|1|51|G|223
6HCQ|1|51|U|224
6HCQ|1|51|G|225
6HCQ|1|51|G|226
6HCQ|1|51|A|227
6HCQ|1|51|C|228
*
6HCQ|1|51|G|240
6HCQ|1|51|G|241
6HCQ|1|51|U|242
6HCQ|1|51|A|243
6HCQ|1|51|G|244

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Y3

Ribosomal protein L26

Chain e3

eL32