J3_6HCQ_026
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCGUGAAAC*GUGGAUCA
- Length
- 40 nucleotides
- Bulged bases
- 6HCQ|1|51|G|409, 6HCQ|1|51|G|413
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCQ|1|51|U|380
6HCQ|1|51|U|381
6HCQ|1|51|G|382
6HCQ|1|51|A|383
6HCQ|1|51|A|384
6HCQ|1|51|A|385
6HCQ|1|51|A|386
6HCQ|1|51|G|387
6HCQ|1|51|A|388
6HCQ|1|51|A|389
6HCQ|1|51|C|390
*
6HCQ|1|51|G|401
6HCQ|1|51|A|402
6HCQ|1|51|G|403
6HCQ|1|51|U|404
6HCQ|1|51|U|405
6HCQ|1|51|C|406
6HCQ|1|51|A|407
6HCQ|1|51|A|408
6HCQ|1|51|G|409
6HCQ|1|51|A|410
6HCQ|1|51|G|411
6HCQ|1|51|G|412
6HCQ|1|51|G|413
6HCQ|1|51|C|414
6HCQ|1|51|G|415
6HCQ|1|51|U|416
6HCQ|1|51|G|417
6HCQ|1|51|A|418
6HCQ|1|51|A|419
6HCQ|1|51|A|420
6HCQ|1|51|C|421
*
6HCQ|1|81|G|13
6HCQ|1|81|U|14
6HCQ|1|81|G|15
6HCQ|1|81|G|16
6HCQ|1|81|A|17
6HCQ|1|81|U|18
6HCQ|1|81|C|19
6HCQ|1|81|A|20
Current chains
- Chain 51
- 28S ribosomal RNA
- Chain 81
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain C3
- uL4
- Chain P3
- uL22
- Chain Y3
- Ribosomal protein L26
- Chain e3
- eL32
- Chain l3
- eL39
Coloring options: