J3_6HCQ_033

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGG*CUGACCCGGUGAGGC*GCUCCGGGGACAG

Length

31 nucleotides

Bulged bases

6HCQ|1|51|G|4076, 6HCQ|1|51|G|4084, 6HCQ|1|51|G|4086, 6HCQ|1|51|G|4087, 6HCQ|1|51|C|4162, 6HCQ|1|51|U|4163

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|C|3937
6HCQ|1|51|G|3938
6HCQ|1|51|G|3939
*
6HCQ|1|51|C|4074
6HCQ|1|51|U|4075
6HCQ|1|51|G|4076
6HCQ|1|51|A|4077
6HCQ|1|51|C|4078
6HCQ|1|51|C|4079
6HCQ|1|51|C|4080
6HCQ|1|51|G|4081
6HCQ|1|51|G|4082
6HCQ|1|51|U|4083
6HCQ|1|51|G|4084
6HCQ|1|51|A|4085
6HCQ|1|51|G|4086
6HCQ|1|51|G|4087
6HCQ|1|51|C|4088
*
6HCQ|1|51|G|4161
6HCQ|1|51|C|4162
6HCQ|1|51|U|4163
6HCQ|1|51|C|4164
6HCQ|1|51|C|4165
6HCQ|1|51|G|4166
6HCQ|1|51|G|4167
6HCQ|1|51|G|4168
6HCQ|1|51|G|4169
6HCQ|1|51|A|4170
6HCQ|1|51|C|4171
6HCQ|1|51|A|4172
6HCQ|1|51|G|4173

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 81

5.8S ribosomal RNA; 5.8S rRNA

Chain A3

Ribosomal protein L8

Chain G3

eL8

Chain N3

Ribosomal protein L15

Chain X3

uL23