J3_6HCQ_036

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GUAAUC*GUUCAGACAUUUGG*CUACCAUCUGUGGGAUUAUGACUGAACGCCUCUAAGUCAGAAUCCCGCC

Length

69 nucleotides

Bulged bases

6HCQ|1|51|A|4589, 6HCQ|1|51|C|4670, 6HCQ|1|51|C|4671, 6HCQ|1|51|U|4677, 6HCQ|1|51|G|4694, 6HCQ|1|51|C|4698, 6HCQ|1|51|A|4708

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|G|4587
6HCQ|1|51|U|4588
6HCQ|1|51|A|4589
6HCQ|1|51|A|4590
6HCQ|1|51|U|4591
6HCQ|1|51|C|4592
*
6HCQ|1|51|G|4618
6HCQ|1|51|U|4619
6HCQ|1|51|U|4620
6HCQ|1|51|C|4621
6HCQ|1|51|A|4622
6HCQ|1|51|G|4623
6HCQ|1|51|A|4624
6HCQ|1|51|C|4625
6HCQ|1|51|A|4626
6HCQ|1|51|U|4627
6HCQ|1|51|U|4628
6HCQ|1|51|U|4629
6HCQ|1|51|G|4630
6HCQ|1|51|G|4631
*
6HCQ|1|51|C|4667
6HCQ|1|51|U|4668
6HCQ|1|51|A|4669
6HCQ|1|51|C|4670
6HCQ|1|51|C|4671
6HCQ|1|51|A|4672
6HCQ|1|51|U|4673
6HCQ|1|51|C|4674
6HCQ|1|51|U|4675
6HCQ|1|51|G|4676
6HCQ|1|51|U|4677
6HCQ|1|51|G|4678
6HCQ|1|51|G|4679
6HCQ|1|51|G|4680
6HCQ|1|51|A|4681
6HCQ|1|51|U|4682
6HCQ|1|51|U|4683
6HCQ|1|51|A|4684
6HCQ|1|51|U|4685
6HCQ|1|51|G|4686
6HCQ|1|51|A|4687
6HCQ|1|51|C|4688
6HCQ|1|51|U|4689
6HCQ|1|51|G|4690
6HCQ|1|51|A|4691
6HCQ|1|51|A|4692
6HCQ|1|51|C|4693
6HCQ|1|51|G|4694
6HCQ|1|51|C|4695
6HCQ|1|51|C|4696
6HCQ|1|51|U|4697
6HCQ|1|51|C|4698
6HCQ|1|51|U|4699
6HCQ|1|51|A|4700
6HCQ|1|51|A|4701
6HCQ|1|51|G|4702
6HCQ|1|51|U|4703
6HCQ|1|51|C|4704
6HCQ|1|51|A|4705
6HCQ|1|51|G|4706
6HCQ|1|51|A|4707
6HCQ|1|51|A|4708
6HCQ|1|51|U|4709
6HCQ|1|51|C|4710
6HCQ|1|51|C|4711
6HCQ|1|51|C|4712
6HCQ|1|51|G|4713
6HCQ|1|51|C|4714
6HCQ|1|51|C|4715

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain H3

uL6

Chain O3

uL13

Chain V3

Ribosomal protein L23

Chain m3

eL40