J3_6HCQ_037

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CUCGGUUGGC*GCCCUUCG*CGCACCGCACGUUCGUGGG

Length

37 nucleotides

Bulged bases

6HCQ|1|51|U|4882, 6HCQ|1|51|A|4938, 6HCQ|1|51|C|4940, 6HCQ|1|51|A|4943, 6HCQ|1|51|C|4944, 6HCQ|1|51|U|4950

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|C|4747
6HCQ|1|51|U|4748
6HCQ|1|51|C|4749
6HCQ|1|51|G|4750
6HCQ|1|51|G|4751
6HCQ|1|51|U|4752
6HCQ|1|51|U|4753
6HCQ|1|51|G|4754
6HCQ|1|51|G|4755
6HCQ|1|51|C|4756
*
6HCQ|1|51|G|4877
6HCQ|1|51|C|4878
6HCQ|1|51|C|4879
6HCQ|1|51|C|4880
6HCQ|1|51|U|4881
6HCQ|1|51|U|4882
6HCQ|1|51|C|4883
6HCQ|1|51|G|4884
*
6HCQ|1|51|C|4935
6HCQ|1|51|G|4936
6HCQ|1|51|C|4937
6HCQ|1|51|A|4938
6HCQ|1|51|C|4939
6HCQ|1|51|C|4940
6HCQ|1|51|G|4941
6HCQ|1|51|C|4942
6HCQ|1|51|A|4943
6HCQ|1|51|C|4944
6HCQ|1|51|G|4945
6HCQ|1|51|U|4946
6HCQ|1|51|U|4947
6HCQ|1|51|C|4948
6HCQ|1|51|G|4949
6HCQ|1|51|U|4950
6HCQ|1|51|G|4951
6HCQ|1|51|G|4952
6HCQ|1|51|G|4953

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain M3

Ribosomal protein L14

Chain O3

uL13

Chain S3

eL20

Chain f3

eL33