J3_6HCQ_047

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

AGCUCAGGGA*UCCCGUGGAG*CAAAAGCU

Length

28 nucleotides

Bulged bases

6HCQ|1|51|A|4280, 6HCQ|1|51|A|4282

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|A|4239
6HCQ|1|51|G|4240
6HCQ|1|51|C|4241
6HCQ|1|51|U|4242
6HCQ|1|51|C|4243
6HCQ|1|51|A|4244
6HCQ|1|51|G|4245
6HCQ|1|51|G|4246
6HCQ|1|51|G|4247
6HCQ|1|51|A|4248
*
6HCQ|1|51|U|4260
6HCQ|1|51|C|4261
6HCQ|1|51|C|4262
6HCQ|1|51|C|4263
6HCQ|1|51|G|4264
6HCQ|1|51|U|4265
6HCQ|1|51|G|4266
6HCQ|1|51|G|4267
6HCQ|1|51|A|4268
6HCQ|1|51|G|4269
*
6HCQ|1|51|C|4278
6HCQ|1|51|A|4279
6HCQ|1|51|A|4280
6HCQ|1|51|A|4281
6HCQ|1|51|A|4282
6HCQ|1|51|G|4283
6HCQ|1|51|C|4284
6HCQ|1|51|U|4285

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 71

5S ribosomal RNA; 5S rRNA

Chain D3

60S ribosomal protein L5

Chain J3

Ribosomal protein L11

Chain T3

eL21

Chain o3

eL42