J3_6HCQ_050

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UGGA*UUAAGAG*CAUUA

Length

16 nucleotides

Bulged bases

6HCQ|1|A2|G|921

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|A2|U|682
6HCQ|1|A2|G|683
6HCQ|1|A2|G|684
6HCQ|1|A2|A|685
*
6HCQ|1|A2|U|917
6HCQ|1|A2|U|918
6HCQ|1|A2|A|919
6HCQ|1|A2|A|920
6HCQ|1|A2|G|921
6HCQ|1|A2|A|922
6HCQ|1|A2|G|923
*
6HCQ|1|A2|C|1019
6HCQ|1|A2|A|1020
6HCQ|1|A2|U|1021
6HCQ|1|A2|U|1022
6HCQ|1|A2|A|1023

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain I2

40S ribosomal protein S7

Chain M2

Ribosomal protein S11

Chain O2

uS15

Chain X2

Ribosomal protein S15a

Chain Y2

uS12

Chain c2

40S ribosomal protein S27