J3_6HCQ_051
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- AGGGCACCACCAG*CCAGUAA*UGAUUAAGUCCCUGCCCU
- Length
- 38 nucleotides
- Bulged bases
- 6HCQ|1|A2|C|1215, 6HCQ|1|A2|C|1216
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCQ|1|A2|A|1209
6HCQ|1|A2|G|1210
6HCQ|1|A2|G|1211
6HCQ|1|A2|G|1212
6HCQ|1|A2|C|1213
6HCQ|1|A2|A|1214
6HCQ|1|A2|C|1215
6HCQ|1|A2|C|1216
6HCQ|1|A2|A|1217
6HCQ|1|A2|C|1218
6HCQ|1|A2|C|1219
6HCQ|1|A2|A|1220
6HCQ|1|A2|G|1221
*
6HCQ|1|A2|C|1645
6HCQ|1|A2|C|1646
6HCQ|1|A2|A|1647
6HCQ|1|A2|G|1648
6HCQ|1|A2|U|1649
6HCQ|1|A2|A|1650
6HCQ|1|A2|A|1651
*
6HCQ|1|A2|U|1673
6HCQ|1|A2|G|1674
6HCQ|1|A2|A|1675
6HCQ|1|A2|U|1676
6HCQ|1|A2|U|1677
6HCQ|1|A2|A|1678
6HCQ|1|A2|A|1679
6HCQ|1|A2|G|1680
6HCQ|1|A2|U|1681
6HCQ|1|A2|C|1682
6HCQ|1|A2|C|1683
6HCQ|1|A2|C|1684
6HCQ|1|A2|U|1685
6HCQ|1|A2|G|1686
6HCQ|1|A2|C|1687
6HCQ|1|A2|C|1688
6HCQ|1|A2|C|1689
6HCQ|1|A2|U|1690
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain 33
- Transfer RNA; tRNA
- Chain D2
- eS1
- Chain G2
- Ribosomal protein S5
- Chain R2
- Ribosomal protein S16
- Chain b2
- eS26
- Chain d2
- Ribosomal protein S28
Coloring options: