J3_6HCQ_052
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- UGGAGC*GCUACACUG*CGUGAUGGGGAUCGGGGAUUGCAAUUAUUCCCCAUGAACGAGGAA
- Length
- 60 nucleotides
- Bulged bases
- 6HCQ|1|A2|U|1535, 6HCQ|1|A2|G|1603, 6HCQ|1|A2|U|1621, 6HCQ|1|A2|U|1622, 6HCQ|1|A2|A|1623
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCQ|1|A2|U|1225
6HCQ|1|A2|G|1226
6HCQ|1|A2|G|1227
6HCQ|1|A2|A|1228
6HCQ|1|A2|G|1229
6HCQ|1|A2|C|1230
*
6HCQ|1|A2|G|1528
6HCQ|1|A2|C|1529
6HCQ|1|A2|U|1530
6HCQ|1|A2|A|1531
6HCQ|1|A2|C|1532
6HCQ|1|A2|A|1533
6HCQ|1|A2|C|1534
6HCQ|1|A2|U|1535
6HCQ|1|A2|G|1536
*
6HCQ|1|A2|C|1597
6HCQ|1|A2|G|1598
6HCQ|1|A2|U|1599
6HCQ|1|A2|G|1600
6HCQ|1|A2|A|1601
6HCQ|1|A2|U|1602
6HCQ|1|A2|G|1603
6HCQ|1|A2|G|1604
6HCQ|1|A2|G|1605
6HCQ|1|A2|G|1606
6HCQ|1|A2|A|1607
6HCQ|1|A2|U|1608
6HCQ|1|A2|C|1609
6HCQ|1|A2|G|1610
6HCQ|1|A2|G|1611
6HCQ|1|A2|G|1612
6HCQ|1|A2|G|1613
6HCQ|1|A2|A|1614
6HCQ|1|A2|U|1615
6HCQ|1|A2|U|1616
6HCQ|1|A2|G|1617
6HCQ|1|A2|C|1618
6HCQ|1|A2|A|1619
6HCQ|1|A2|A|1620
6HCQ|1|A2|U|1621
6HCQ|1|A2|U|1622
6HCQ|1|A2|A|1623
6HCQ|1|A2|U|1624
6HCQ|1|A2|U|1625
6HCQ|1|A2|C|1626
6HCQ|1|A2|C|1627
6HCQ|1|A2|C|1628
6HCQ|1|A2|C|1629
6HCQ|1|A2|A|1630
6HCQ|1|A2|U|1631
6HCQ|1|A2|G|1632
6HCQ|1|A2|A|1633
6HCQ|1|A2|A|1634
6HCQ|1|A2|C|1635
6HCQ|1|A2|G|1636
6HCQ|1|A2|A|1637
6HCQ|1|A2|G|1638
6HCQ|1|A2|G|1639
6HCQ|1|A2|A|1640
6HCQ|1|A2|A|1641
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain 33
- Transfer RNA; tRNA
- Chain G2
- Ribosomal protein S5
- Chain Q2
- uS19
- Chain R2
- Ribosomal protein S16
- Chain T2
- uS13
- Chain U2
- eS19
- Chain a2
- eS25
- Chain e2
- uS14
Coloring options: