J3_6HCQ_053
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- GCUUAAUUU*GGGAAACCUCACCCG*CGGGGCUGC
- Length
- 33 nucleotides
- Bulged bases
- 6HCQ|1|A2|G|1256, 6HCQ|1|A2|A|1258, 6HCQ|1|A2|A|1260
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCQ|1|A2|G|1236
6HCQ|1|A2|C|1237
6HCQ|1|A2|U|1238
6HCQ|1|A2|U|1239
6HCQ|1|A2|A|1240
6HCQ|1|A2|A|1241
6HCQ|1|A2|U|1242
6HCQ|1|A2|U|1243
6HCQ|1|A2|U|1244
*
6HCQ|1|A2|G|1255
6HCQ|1|A2|G|1256
6HCQ|1|A2|G|1257
6HCQ|1|A2|A|1258
6HCQ|1|A2|A|1259
6HCQ|1|A2|A|1260
6HCQ|1|A2|C|1261
6HCQ|1|A2|C|1262
6HCQ|1|A2|U|1263
6HCQ|1|A2|C|1264
6HCQ|1|A2|A|1265
6HCQ|1|A2|C|1266
6HCQ|1|A2|C|1267
6HCQ|1|A2|C|1268
6HCQ|1|A2|G|1269
*
6HCQ|1|A2|C|1513
6HCQ|1|A2|G|1514
6HCQ|1|A2|G|1515
6HCQ|1|A2|G|1516
6HCQ|1|A2|G|1517
6HCQ|1|A2|C|1518
6HCQ|1|A2|U|1519
6HCQ|1|A2|G|1520
6HCQ|1|A2|C|1521
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain L2
- eS10
- Chain Q2
- uS19
- Chain T2
- uS13
- Chain V2
- uS10
- Chain e2
- uS14
- Chain g2
- Ribosomal protein S27a
- Chain q3
- Transfer RNA; tRNA
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