J3_6HD7_002

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUGAAAAG*CG*CUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HD7|1|1|G|368
6HD7|1|1|A|369
6HD7|1|1|U|370
6HD7|1|1|G|371
6HD7|1|1|A|372
6HD7|1|1|A|373
6HD7|1|1|A|374
6HD7|1|1|A|375
6HD7|1|1|G|376
*
6HD7|1|1|C|403
6HD7|1|1|G|404
*
6HD7|1|4|C|19
6HD7|1|4|U|20
6HD7|1|4|C|21

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Chain 4

5.8S rRNA

Nearby chains

Chain G

60S ribosomal protein L4-A

Chain R

60S ribosomal protein L17-A

Chain a

60S ribosomal protein L26-A

Chain n

60S ribosomal protein L39