J3_6HD7_019
3D structure
- PDB id
- 6HD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-NatA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GACCGAUAGCGAACAAGUAC*GGAAAG*CUUGGU
- Length
- 32 nucleotides
- Bulged bases
- 6HD7|1|1|A|338, 6HD7|1|1|U|343, 6HD7|1|1|A|351, 6HD7|1|4|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HD7|1|1|G|337
6HD7|1|1|A|338
6HD7|1|1|C|339
6HD7|1|1|C|340
6HD7|1|1|G|341
6HD7|1|1|A|342
6HD7|1|1|U|343
6HD7|1|1|A|344
6HD7|1|1|G|345
6HD7|1|1|C|346
6HD7|1|1|G|347
6HD7|1|1|A|348
6HD7|1|1|A|349
6HD7|1|1|C|350
6HD7|1|1|A|351
6HD7|1|1|A|352
6HD7|1|1|G|353
6HD7|1|1|U|354
6HD7|1|1|A|355
6HD7|1|1|C|356
*
6HD7|1|1|G|363
6HD7|1|1|G|364
6HD7|1|1|A|365
6HD7|1|1|A|366
6HD7|1|1|A|367
6HD7|1|1|G|368
*
6HD7|1|4|C|21
6HD7|1|4|U|22
6HD7|1|4|U|23
6HD7|1|4|G|24
6HD7|1|4|G|25
6HD7|1|4|U|26
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain a
- 60S ribosomal protein L26-A
- Chain l
- 60S ribosomal protein L37-A
- Chain n
- 60S ribosomal protein L39
- Chain z
- nascent polypeptide chain
Coloring options: