J3_6HD7_027

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAU

Length

32 nucleotides

Bulged bases

6HD7|1|1|A|3172, 6HD7|1|1|G|3173, 6HD7|1|1|A|3215, 6HD7|1|1|C|3217, 6HD7|1|1|A|3218, 6HD7|1|1|A|3268, 6HD7|1|1|U|3270, 6HD7|1|1|C|3272, 6HD7|1|1|U|3275, 6HD7|1|1|G|3276, 6HD7|1|1|U|3277, 6HD7|1|1|C|3278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HD7|1|1|A|3170
6HD7|1|1|U|3171
6HD7|1|1|A|3172
6HD7|1|1|G|3173
6HD7|1|1|A|3174
6HD7|1|1|U|3175
6HD7|1|1|G|3176
*
6HD7|1|1|C|3212
6HD7|1|1|A|3213
6HD7|1|1|U|3214
6HD7|1|1|A|3215
6HD7|1|1|G|3216
6HD7|1|1|C|3217
6HD7|1|1|A|3218
6HD7|1|1|G|3219
6HD7|1|1|G|3220
*
6HD7|1|1|C|3265
6HD7|1|1|G|3266
6HD7|1|1|A|3267
6HD7|1|1|A|3268
6HD7|1|1|U|3269
6HD7|1|1|U|3270
6HD7|1|1|G|3271
6HD7|1|1|C|3272
6HD7|1|1|A|3273
6HD7|1|1|A|3274
6HD7|1|1|U|3275
6HD7|1|1|G|3276
6HD7|1|1|U|3277
6HD7|1|1|C|3278
6HD7|1|1|A|3279
6HD7|1|1|U|3280

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain I

60S ribosomal protein L6-A

Chain O

60S ribosomal protein L14-A

Chain Q

60S ribosomal protein L16-A

Chain R

60S ribosomal protein L17-A

Chain h

60S ribosomal protein L33-A