J3_6HHQ_005
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 6HHQ|1|1|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HHQ_005 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.0411
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6HHQ|1|1|A|828
6HHQ|1|1|U|829
6HHQ|1|1|A|830
6HHQ|1|1|G|831
*
6HHQ|1|1|C|863
6HHQ|1|1|G|864
6HHQ|1|1|U|865
6HHQ|1|1|A|866
6HHQ|1|1|G|867
*
6HHQ|1|1|U|892
6HHQ|1|1|C|893
6HHQ|1|1|G|894
6HHQ|1|1|A|895
6HHQ|1|1|A|896
6HHQ|1|1|U|897
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AH
- 60S ribosomal protein L34-A
- Chain AQ
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-A
- Chain z
- 60S ribosomal protein L19-A
Coloring options: