J3_6HHQ_022
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 6HHQ|1|A|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HHQ_022 not in the Motif Atlas
- Homologous match to J3_8C3A_037
- Geometric discrepancy: 0.1612
- The information below is about J3_8C3A_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_95208.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6HHQ|1|A|C|1037
6HHQ|1|A|U|1038
6HHQ|1|A|A|1039
*
6HHQ|1|A|U|1079
6HHQ|1|A|U|1080
6HHQ|1|A|A|1081
6HHQ|1|A|C|1082
6HHQ|1|A|G|1083
*
6HHQ|1|A|C|1090
6HHQ|1|A|A|1091
6HHQ|1|A|A|1092
6HHQ|1|A|A|1093
6HHQ|1|A|G|1094
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S0-A
- Chain O
- 40S ribosomal protein S13
- Chain W
- 40S ribosomal protein S21-A
- Chain X
- 40S ribosomal protein S22-A
- Chain b
- 40S ribosomal protein S26-B
- Chain c
- 40S ribosomal protein S27-A
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