J3_6HHQ_027
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 6HHQ|1|A|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HHQ_027 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.1451
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_99563.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6HHQ|1|A|U|1283
6HHQ|1|A|C|1284
6HHQ|1|A|U|1285
6HHQ|1|A|U|1286
6HHQ|1|A|A|1287
6HHQ|1|A|G|1288
*
6HHQ|1|A|C|1327
6HHQ|1|A|G|1328
6HHQ|1|A|A|1329
6HHQ|1|A|G|1330
6HHQ|1|A|A|1331
6HHQ|1|A|C|1332
*
6HHQ|1|A|G|1419
6HHQ|1|A|C|1420
6HHQ|1|A|A|1421
6HHQ|1|A|A|1422
6HHQ|1|A|U|1423
6HHQ|1|A|A|1424
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S2
- Chain E
- 40S ribosomal protein S3
- Chain R
- 40S ribosomal protein S16-A
- Chain S
- 40S ribosomal protein S17-A
- Chain V
- 40S ribosomal protein S20
- Chain e
- 40S ribosomal protein S29-A
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