J3_6HHQ_028

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HHQ_028 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.09

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6HHQ|1|A|U|1293
6HHQ|1|A|G|1294
*
6HHQ|1|A|U|1303
6HHQ|1|A|G|1304
6HHQ|1|A|U|1305
6HHQ|1|A|C|1306
*
6HHQ|1|A|G|1318
6HHQ|1|A|A|1319
6HHQ|1|A|U|1320
6HHQ|1|A|A|1321
6HHQ|1|A|A|1322

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S0-A

Chain D

40S ribosomal protein S2

Chain S

40S ribosomal protein S17-A