J3_6HHQ_031
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 6HHQ|1|AR|U|117, 6HHQ|1|AR|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HHQ_031 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.0488
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19664.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6HHQ|1|AR|C|113
6HHQ|1|AR|A|114
6HHQ|1|AR|A|115
6HHQ|1|AR|A|116
6HHQ|1|AR|U|117
6HHQ|1|AR|U|118
6HHQ|1|AR|U|119
6HHQ|1|AR|G|120
6HHQ|1|AR|A|121
6HHQ|1|AR|A|122
6HHQ|1|AR|A|123
*
6HHQ|1|AR|U|149
6HHQ|1|AR|A|150
6HHQ|1|AR|A|151
6HHQ|1|AR|U|152
6HHQ|1|AR|U|153
6HHQ|1|AR|U|154
6HHQ|1|AR|G|155
6HHQ|1|AR|G|156
6HHQ|1|AR|A|157
6HHQ|1|AR|G|158
*
6HHQ|1|AR|C|263
6HHQ|1|AR|G|264
6HHQ|1|AR|A|265
6HHQ|1|AR|A|266
6HHQ|1|AR|G|267
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CJ
- 60S ribosomal protein L8-A
- Chain CN
- 60S ribosomal protein L13-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain DJ
- 60S ribosomal protein L35-A
- Chain DK
- 60S ribosomal protein L36-A
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