J3_6HHQ_047

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HHQ_047 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.054

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6HHQ|1|sR|A|41
6HHQ|1|sR|G|42
*
6HHQ|1|sR|C|433
6HHQ|1|sR|G|434
6HHQ|1|sR|C|435
6HHQ|1|sR|A|436
6HHQ|1|sR|A|437
6HHQ|1|sR|A|438
6HHQ|1|sR|U|439
*
6HHQ|1|sR|A|464
6HHQ|1|sR|G|465
6HHQ|1|sR|U|466

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain s9

40S ribosomal protein S9-A