J3_6HHQ_058
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 6HHQ|1|sR|U|1413, 6HHQ|1|sR|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HHQ_058 not in the Motif Atlas
- Homologous match to J3_4V88_040
- Geometric discrepancy: 0.0658
- The information below is about J3_4V88_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.2
- Basepair signature
- cWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6HHQ|1|sR|A|1336
6HHQ|1|sR|A|1337
6HHQ|1|sR|C|1338
*
6HHQ|1|sR|G|1386
6HHQ|1|sR|G|1387
6HHQ|1|sR|A|1388
6HHQ|1|sR|C|1389
*
6HHQ|1|sR|G|1412
6HHQ|1|sR|U|1413
6HHQ|1|sR|U|1414
6HHQ|1|sR|U|1415
Current chains
- Chain sR
- 18S ribosomal RNA
Nearby chains
- Chain Rb
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain c6
- 40S ribosomal protein S16-A
- Chain c7
- 40S ribosomal protein S17-A
- Chain d0
- 40S ribosomal protein S20
- Chain d9
- 40S ribosomal protein S29-A
- Chain s5
- 40S ribosomal protein S5
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