J3_6HHQ_074
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6HHQ|1|AR|A|398, 6HHQ|1|AR|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HHQ_074 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0311
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6HHQ|1|AR|A|369
6HHQ|1|AR|U|370
6HHQ|1|AR|G|371
6HHQ|1|AR|A|372
6HHQ|1|AR|A|373
6HHQ|1|AR|A|374
6HHQ|1|AR|A|375
6HHQ|1|AR|G|376
6HHQ|1|AR|A|377
6HHQ|1|AR|A|378
6HHQ|1|AR|C|379
*
6HHQ|1|AR|G|390
6HHQ|1|AR|A|391
6HHQ|1|AR|G|392
6HHQ|1|AR|U|393
6HHQ|1|AR|G|394
6HHQ|1|AR|A|395
6HHQ|1|AR|A|396
6HHQ|1|AR|A|397
6HHQ|1|AR|A|398
6HHQ|1|AR|A|399
6HHQ|1|AR|G|400
6HHQ|1|AR|U|401
6HHQ|1|AR|A|402
6HHQ|1|AR|C|403
6HHQ|1|AR|G|404
*
6HHQ|1|AT|C|19
6HHQ|1|AT|U|20
Current chains
- Chain AR
- 25S ribosomal RNA
- Chain AT
- 5.8S ribosomal RNA
Nearby chains
- Chain CF
- 60S ribosomal protein L4-A
- Chain CR
- 60S ribosomal protein L17-A
- Chain DA
- 60S ribosomal protein L26-A
- Chain DN
- 60S ribosomal protein L39
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