J3_6HHQ_075

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAUGG*CGUUUCAAAGGCC*GCCACCAU

Length

27 nucleotides

Bulged bases

6HHQ|1|AR|C|1556, 6HHQ|1|AR|A|1558, 6HHQ|1|AR|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HHQ_075 not in the Motif Atlas

Homologous match to J3_8P9A_056

Geometric discrepancy: 0.0944

The information below is about J3_8P9A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38098.1

Basepair signature

cWW-tSH-tWH-tWW-F-tHS-F-cWW-F-F-F-F-F-F-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

6HHQ|1|AR|A|1537
6HHQ|1|AR|G|1538
6HHQ|1|AR|A|1539
6HHQ|1|AR|U|1540
6HHQ|1|AR|G|1541
6HHQ|1|AR|G|1542
*
6HHQ|1|AR|C|1551
6HHQ|1|AR|G|1552
6HHQ|1|AR|U|1553
6HHQ|1|AR|U|1554
6HHQ|1|AR|U|1555
6HHQ|1|AR|C|1556
6HHQ|1|AR|A|1557
6HHQ|1|AR|A|1558
6HHQ|1|AR|A|1559
6HHQ|1|AR|G|1560
6HHQ|1|AR|G|1561
6HHQ|1|AR|C|1562
6HHQ|1|AR|C|1563
*
6HHQ|1|AR|G|1577
6HHQ|1|AR|C|1578
6HHQ|1|AR|C|1579
6HHQ|1|AR|A|1580
6HHQ|1|AR|C|1581
6HHQ|1|AR|C|1582
6HHQ|1|AR|A|1583
6HHQ|1|AR|U|1584

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AT

5.8S ribosomal RNA; 5.8S rRNA

Chain CD

60S ribosomal protein L2-A

Chain CJ

60S ribosomal protein L8-A

Chain CP

60S ribosomal protein L15-A

Chain CZ

60S ribosomal protein L25

Chain DL

60S ribosomal protein L37-A