J3_6HHQ_076

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HHQ_076 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0574

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6HHQ|1|AR|A|1654
6HHQ|1|AR|G|1655
6HHQ|1|AR|A|1656
6HHQ|1|AR|C|1657
6HHQ|1|AR|G|1658
*
6HHQ|1|AR|C|1791
6HHQ|1|AR|C|1792
*
6HHQ|1|AR|G|1796
6HHQ|1|AR|A|1797
6HHQ|1|AR|A|1798
6HHQ|1|AR|A|1799
6HHQ|1|AR|A|1800
6HHQ|1|AR|U|1801

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain DI

60S ribosomal protein L34-A

Chain DR

60S ribosomal protein L43-A