J3_6HMA_003

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

6HMA|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HMA_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1827

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6HMA|1|A|C|272
6HMA|1|A|A|273
6HMA|1|A|A|274
6HMA|1|A|A|275
6HMA|1|A|C|276
*
6HMA|1|A|G|295
6HMA|1|A|G|296
6HMA|1|A|G|297
6HMA|1|A|U|298
6HMA|1|A|U|299
6HMA|1|A|G|300
6HMA|1|A|U|301
6HMA|1|A|A|302
*
6HMA|1|A|U|415
6HMA|1|A|G|416

Current chains

Chain A

23S ribosomal RNA

Nearby chains