J3_6HMA_004

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

6HMA|1|A|U|731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HMA_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0866

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6HMA|1|A|U|728
6HMA|1|A|G|729
6HMA|1|A|A|730
6HMA|1|A|U|731
6HMA|1|A|C|732
6HMA|1|A|U|733
6HMA|1|A|A|734
*
6HMA|1|A|U|818
6HMA|1|A|A|819
6HMA|1|A|G|820
*
6HMA|1|A|C|836
6HMA|1|A|G|837
6HMA|1|A|A|838
6HMA|1|A|A|839

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2