J3_6HMA_009

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUG*CUAACCC*GGAGACAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HMA|1|A|U|2118
6HMA|1|A|U|2119
6HMA|1|A|G|2120
*
6HMA|1|A|C|2223
6HMA|1|A|U|2224
6HMA|1|A|A|2225
6HMA|1|A|A|2226
6HMA|1|A|C|2227
6HMA|1|A|C|2228
6HMA|1|A|C|2229
*
6HMA|1|A|G|2248
6HMA|1|A|G|2249
6HMA|1|A|A|2250
6HMA|1|A|G|2251
6HMA|1|A|A|2252
6HMA|1|A|C|2253
6HMA|1|A|A|2254
6HMA|1|A|G|2255

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain V

50S ribosomal protein L28