J3_6HMA_015
3D structure
- PDB id
- 6HMA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6HMA|1|A|U|34, 6HMA|1|A|U|494, 6HMA|1|A|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HMA|1|A|C|32
6HMA|1|A|U|33
6HMA|1|A|U|34
6HMA|1|A|G|35
*
6HMA|1|A|C|491
6HMA|1|A|G|492
6HMA|1|A|A|493
6HMA|1|A|U|494
6HMA|1|A|A|495
6HMA|1|A|G|496
6HMA|1|A|U|497
6HMA|1|A|G|498
6HMA|1|A|A|499
6HMA|1|A|A|500
6HMA|1|A|C|501
6HMA|1|A|C|502
6HMA|1|A|A|503
6HMA|1|A|G|504
6HMA|1|A|U|505
6HMA|1|A|A|506
6HMA|1|A|C|507
*
6HMA|1|A|G|514
6HMA|1|A|G|515
6HMA|1|A|A|516
6HMA|1|A|A|517
6HMA|1|A|A|518
6HMA|1|A|G|519
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L23
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