J3_6HMA_017

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UCGGGUCC*GGAUAA*UA

Length

16 nucleotides

Bulged bases

6HMA|1|A|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HMA|1|A|U|1381
6HMA|1|A|C|1382
6HMA|1|A|G|1383
6HMA|1|A|G|1384
6HMA|1|A|G|1385
6HMA|1|A|U|1386
6HMA|1|A|C|1387
6HMA|1|A|C|1388
*
6HMA|1|A|G|1417
6HMA|1|A|G|1418
6HMA|1|A|A|1419
6HMA|1|A|U|1420
6HMA|1|A|A|1421
6HMA|1|A|A|1422
*
6HMA|1|A|U|1439
6HMA|1|A|A|1440

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L23