J3_6HMA_019

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCGAAG*CGU*GGAGAAGACAUUGUGUCUUCGAGUCGUU

Length

37 nucleotides

Bulged bases

6HMA|1|A|A|1580, 6HMA|1|A|U|1582, 6HMA|1|A|G|1583, 6HMA|1|A|U|1584, 6HMA|1|A|G|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HMA|1|A|G|1485
6HMA|1|A|C|1486
6HMA|1|A|G|1487
6HMA|1|A|A|1488
6HMA|1|A|A|1489
6HMA|1|A|G|1490
*
6HMA|1|A|C|1508
6HMA|1|A|G|1509
6HMA|1|A|U|1510
*
6HMA|1|A|G|1571
6HMA|1|A|G|1572
6HMA|1|A|A|1573
6HMA|1|A|G|1574
6HMA|1|A|A|1575
6HMA|1|A|A|1576
6HMA|1|A|G|1577
6HMA|1|A|A|1578
6HMA|1|A|C|1579
6HMA|1|A|A|1580
6HMA|1|A|U|1581
6HMA|1|A|U|1582
6HMA|1|A|G|1583
6HMA|1|A|U|1584
6HMA|1|A|G|1585
6HMA|1|A|U|1586
6HMA|1|A|C|1587
6HMA|1|A|U|1588
6HMA|1|A|U|1589
6HMA|1|A|C|1590
6HMA|1|A|G|1591
6HMA|1|A|A|1592
6HMA|1|A|G|1593
6HMA|1|A|U|1594
6HMA|1|A|C|1595
6HMA|1|A|G|1596
6HMA|1|A|U|1597
6HMA|1|A|U|1598

Current chains

Chain A

23S ribosomal RNA

Nearby chains