J3_6HMA_020
3D structure
- PDB id
- 6HMA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GCU*ACUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6HMA|1|A|U|2417, 6HMA|1|A|A|2453
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HMA_020 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.5559
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6HMA|1|A|G|2309
6HMA|1|A|C|2310
6HMA|1|A|U|2311
*
6HMA|1|A|A|2411
6HMA|1|A|C|2412
6HMA|1|A|U|2413
6HMA|1|A|U|2414
6HMA|1|A|A|2415
6HMA|1|A|G|2416
6HMA|1|A|U|2417
6HMA|1|A|G|2418
6HMA|1|A|A|2419
6HMA|1|A|U|2420
6HMA|1|A|C|2421
6HMA|1|A|C|2422
*
6HMA|1|A|G|2448
6HMA|1|A|C|2449
6HMA|1|A|U|2450
6HMA|1|A|C|2451
6HMA|1|A|A|2452
6HMA|1|A|A|2453
6HMA|1|A|C|2454
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain J
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L27
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