3D structure

PDB id
6HRM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S d2d8 stapled ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
GC*GGAAUAU*AGC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6HRM_001 not in the Motif Atlas
Homologous match to J3_5J7L_001
Geometric discrepancy: 0.1152
The information below is about J3_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.4
Basepair signature
cWW-cWW-cSW-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6HRM|1|1|G|46
6HRM|1|1|C|47
*
6HRM|1|1|G|361
6HRM|1|1|G|362
6HRM|1|1|A|363
6HRM|1|1|A|364
6HRM|1|1|U|365
6HRM|1|1|A|366
6HRM|1|1|U|367
*
6HRM|1|1|A|393
6HRM|1|1|G|394
6HRM|1|1|C|395

Current chains

Chain 1
stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain q
30S ribosomal protein S12
Chain u
30S ribosomal protein S16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2804 s