J3_6HRM_014

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GAG*CUG*CC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HRM_014 not in the Motif Atlas

Geometric match to J3_5J7L_047

Geometric discrepancy: 0.1656

The information below is about J3_5J7L_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30104.1

Basepair signature

cWW-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6HRM|1|1|G|1490
6HRM|1|1|A|1491
6HRM|1|1|G|1492
*
6HRM|1|1|C|4295
6HRM|1|1|U|4296
6HRM|1|1|G|4297
*
6HRM|1|1|C|4311
6HRM|1|1|C|4312

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain C

50S ribosomal protein L3