J3_6HRM_016
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 6HRM|1|1|A|1580
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HRM_016 not in the Motif Atlas
- Geometric match to J3_4V9F_014
- Geometric discrepancy: 0.0849
- The information below is about J3_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6HRM|1|1|A|1562
6HRM|1|1|C|1563
*
6HRM|1|1|G|1576
6HRM|1|1|A|1577
6HRM|1|1|U|1578
6HRM|1|1|A|1579
6HRM|1|1|A|1580
6HRM|1|1|G|1581
6HRM|1|1|C|1582
*
6HRM|1|1|G|1616
6HRM|1|1|A|1617
6HRM|1|1|U|1618
6HRM|1|1|U|1619
6HRM|1|1|U|1620
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain T
- 50S ribosomal protein L23
- Chain Y
- 50S ribosomal protein L29
- Chain d
- 50S ribosomal protein L34
Coloring options: