J3_6HRM_017
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 6HRM|1|1|U|2192, 6HRM|1|1|A|2298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HRM_017 not in the Motif Atlas
- Geometric match to J3_5J7L_038
- Geometric discrepancy: 0.0647
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6HRM|1|1|U|2189
6HRM|1|1|G|2190
6HRM|1|1|A|2191
6HRM|1|1|U|2192
6HRM|1|1|C|2193
6HRM|1|1|U|2194
6HRM|1|1|A|2195
*
6HRM|1|1|U|2279
6HRM|1|1|G|2280
6HRM|1|1|G|2281
*
6HRM|1|1|C|2297
6HRM|1|1|A|2298
6HRM|1|1|A|2299
6HRM|1|1|A|2300
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L34
Coloring options: