3D structure

PDB id
6HRM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S d2d8 stapled ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
UCGACC*GAAA*UA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6HRM_022 not in the Motif Atlas
Geometric match to J3_5J7L_043
Geometric discrepancy: 0.1131
The information below is about J3_5J7L_043
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92705.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW
Number of instances in this motif group
1

Unit IDs

6HRM|1|1|U|2850
6HRM|1|1|C|2851
6HRM|1|1|G|2852
6HRM|1|1|A|2853
6HRM|1|1|C|2854
6HRM|1|1|C|2855
*
6HRM|1|1|G|2888
6HRM|1|1|A|2889
6HRM|1|1|A|2890
6HRM|1|1|A|2891
*
6HRM|1|1|U|2908
6HRM|1|1|A|2909

Current chains

Chain 1
stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain T
50S ribosomal protein L23

Coloring options:


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