J3_6HRM_022
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UCGACC*GAAA*UA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HRM_022 not in the Motif Atlas
- Geometric match to J3_5J7L_043
- Geometric discrepancy: 0.1131
- The information below is about J3_5J7L_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92705.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6HRM|1|1|U|2850
6HRM|1|1|C|2851
6HRM|1|1|G|2852
6HRM|1|1|A|2853
6HRM|1|1|C|2854
6HRM|1|1|C|2855
*
6HRM|1|1|G|2888
6HRM|1|1|A|2889
6HRM|1|1|A|2890
6HRM|1|1|A|2891
*
6HRM|1|1|U|2908
6HRM|1|1|A|2909
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain T
- 50S ribosomal protein L23
Coloring options: