J3_6HRM_024
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 6HRM|1|1|U|3840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HRM_024 not in the Motif Atlas
- Geometric match to J3_5J7L_071
- Geometric discrepancy: 0.2126
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6HRM|1|1|C|3801
6HRM|1|1|U|3802
6HRM|1|1|A|3803
6HRM|1|1|A|3804
6HRM|1|1|U|3805
*
6HRM|1|1|A|3823
6HRM|1|1|G|3824
6HRM|1|1|G|3825
6HRM|1|1|U|3826
6HRM|1|1|U|3827
6HRM|1|1|A|3828
6HRM|1|1|G|3829
*
6HRM|1|1|C|3838
6HRM|1|1|A|3839
6HRM|1|1|U|3840
6HRM|1|1|A|3841
6HRM|1|1|A|3842
6HRM|1|1|G|3843
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain E
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
Coloring options: