J3_6HRM_025
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 6HRM|1|1|A|4024, 6HRM|1|1|U|4025
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HRM_025 not in the Motif Atlas
- Geometric match to J3_5J7L_046
- Geometric discrepancy: 0.0922
- The information below is about J3_5J7L_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6HRM|1|1|C|4023
6HRM|1|1|A|4024
6HRM|1|1|U|4025
6HRM|1|1|C|4026
*
6HRM|1|1|G|4051
6HRM|1|1|U|4052
6HRM|1|1|A|4053
*
6HRM|1|1|U|4067
6HRM|1|1|U|4068
6HRM|1|1|U|4069
6HRM|1|1|A|4070
6HRM|1|1|A|4071
6HRM|1|1|A|4072
6HRM|1|1|G|4073
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L14
Coloring options: