J3_6HRM_037
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6HRM|1|1|A|3894, 6HRM|1|1|U|3896, 6HRM|1|1|A|3932
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HRM_037 not in the Motif Atlas
- Geometric match to J3_5J7L_070
- Geometric discrepancy: 0.0929
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6HRM|1|1|G|3788
6HRM|1|1|C|3789
6HRM|1|1|A|3790
*
6HRM|1|1|U|3890
6HRM|1|1|C|3891
6HRM|1|1|A|3892
6HRM|1|1|U|3893
6HRM|1|1|A|3894
6HRM|1|1|G|3895
6HRM|1|1|U|3896
6HRM|1|1|G|3897
6HRM|1|1|A|3898
6HRM|1|1|U|3899
6HRM|1|1|C|3900
6HRM|1|1|C|3901
*
6HRM|1|1|G|3927
6HRM|1|1|C|3928
6HRM|1|1|U|3929
6HRM|1|1|C|3930
6HRM|1|1|A|3931
6HRM|1|1|A|3932
6HRM|1|1|C|3933
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain c
- 50S ribosomal protein L33
- Chain e
- 50S ribosomal protein L35
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