J3_6HTQ_013

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HTQ_013 not in the Motif Atlas

Homologous match to J3_6CZR_015

Geometric discrepancy: 0.1703

The information below is about J3_6CZR_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.3

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6HTQ|1|a|G|48
6HTQ|1|a|C|49
*
6HTQ|1|a|G|369
6HTQ|1|a|G|370
6HTQ|1|a|A|371
6HTQ|1|a|A|372
6HTQ|1|a|U|373
6HTQ|1|a|C|374
6HTQ|1|a|U|375
*
6HTQ|1|a|A|401
6HTQ|1|a|G|402
6HTQ|1|a|C|403

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16

Chain x

GTP pyrophosphokinase