J3_6HTQ_038

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

6HTQ|1|a|U|1221, 6HTQ|1|a|U|1223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HTQ_038 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1876

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6HTQ|1|a|C|1000
6HTQ|1|a|U|1001
6HTQ|1|a|U|1002
6HTQ|1|a|G|1003
6HTQ|1|a|A|1004
6HTQ|1|a|C|1005
6HTQ|1|a|A|1006
6HTQ|1|a|U|1007
*
6HTQ|1|a|A|1054
6HTQ|1|a|C|1055
6HTQ|1|a|A|1056
6HTQ|1|a|G|1057
*
6HTQ|1|a|C|1219
6HTQ|1|a|U|1220
6HTQ|1|a|U|1221
6HTQ|1|a|A|1222
6HTQ|1|a|U|1223
6HTQ|1|a|G|1224

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14