J3_6I7O_008

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUUAAUUU*GGGGAAACUCAC*GGCCG

Length

25 nucleotides

Bulged bases

6I7O|1|2|G|1199, 6I7O|1|2|G|1201, 6I7O|1|2|A|1203, 6I7O|1|2|A|1204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I7O_008 not in the Motif Atlas

Geometric match to J3_8C3A_040

Geometric discrepancy: 0.1627

The information below is about J3_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.3

Basepair signature

cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6I7O|1|2|C|1180
6I7O|1|2|U|1181
6I7O|1|2|U|1182
6I7O|1|2|A|1183
6I7O|1|2|A|1184
6I7O|1|2|U|1185
6I7O|1|2|U|1186
6I7O|1|2|U|1187
*
6I7O|1|2|G|1198
6I7O|1|2|G|1199
6I7O|1|2|G|1200
6I7O|1|2|G|1201
6I7O|1|2|A|1202
6I7O|1|2|A|1203
6I7O|1|2|A|1204
6I7O|1|2|C|1205
6I7O|1|2|U|1206
6I7O|1|2|C|1207
6I7O|1|2|A|1208
6I7O|1|2|C|1209
*
6I7O|1|2|G|1454
6I7O|1|2|G|1455
6I7O|1|2|C|1456
6I7O|1|2|C|1457
6I7O|1|2|G|1458

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S15

Chain H

40S ribosomal protein S18-A

Chain J

40S ribosomal protein S20

Chain M

40S ribosomal protein S29-A

Chain N

Ubiquitin-40S ribosomal protein S31