J3_6I7O_060

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I7O_060 not in the Motif Atlas

Homologous match to J3_5TBW_015

Geometric discrepancy: 0.2023

The information below is about J3_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_48314.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6I7O|1|YQ|C|3298
6I7O|1|YQ|A|3299
6I7O|1|YQ|U|3300
*
6I7O|1|YQ|A|3314
6I7O|1|YQ|G|3315
6I7O|1|YQ|A|3316
6I7O|1|YQ|U|3317
6I7O|1|YQ|G|3318
*
6I7O|1|YQ|C|3388
6I7O|1|YQ|U|3389
6I7O|1|YQ|G|3390

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XX

60S ribosomal protein L17-A

Chain YA

60S ribosomal protein L3

Chain YC

60S ribosomal protein L31-A