J3_6I7O_069
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- AGAUAAAAAAUCAAUG*CUCUUUG*CAU
- Length
- 26 nucleotides
- Bulged bases
- 6I7O|1|2b|A|217, 6I7O|1|2b|U|240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6I7O|1|2b|A|213
6I7O|1|2b|G|214
6I7O|1|2b|A|215
6I7O|1|2b|U|216
6I7O|1|2b|A|217
6I7O|1|2b|A|218
6I7O|1|2b|A|219
6I7O|1|2b|A|220
6I7O|1|2b|A|221
6I7O|1|2b|A|222
6I7O|1|2b|U|223
6I7O|1|2b|C|224
6I7O|1|2b|A|225
6I7O|1|2b|A|226
6I7O|1|2b|U|227
6I7O|1|2b|G|228
*
6I7O|1|2b|C|237
6I7O|1|2b|U|238
6I7O|1|2b|C|239
6I7O|1|2b|U|240
6I7O|1|2b|U|241
6I7O|1|2b|U|242
6I7O|1|2b|G|243
*
6I7O|1|2b|C|250
6I7O|1|2b|A|251
6I7O|1|2b|U|252
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Sb
- 40S ribosomal protein S4-A
- Chain Tb
- 40S ribosomal protein S6-A
- Chain Vb
- 40S ribosomal protein S8-A
- Chain Xb
- 40S ribosomal protein S11-A
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