J3_6I7O_071

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGGAG*CUAC*GGAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7O|1|2b|U|1168
6I7O|1|2b|G|1169
6I7O|1|2b|G|1170
6I7O|1|2b|A|1171
6I7O|1|2b|G|1172
*
6I7O|1|2b|C|1467
6I7O|1|2b|U|1468
6I7O|1|2b|A|1469
6I7O|1|2b|C|1470
*
6I7O|1|2b|G|1574
6I7O|1|2b|G|1575
6I7O|1|2b|A|1576
6I7O|1|2b|A|1577

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Bb

40S ribosomal protein S5

Chain Fb

40S ribosomal protein S16-A

Chain Hb

40S ribosomal protein S18-A

Chain Ib

40S ribosomal protein S19-A

Chain mb

Transfer RNA; tRNA