J3_6I7O_072
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 6I7O|1|2b|U|1390, 6I7O|1|2b|U|1413, 6I7O|1|2b|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6I7O_072 not in the Motif Atlas
- Homologous match to J3_8P9A_083
- Geometric discrepancy: 0.173
- The information below is about J3_8P9A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88233.1
- Basepair signature
- cWW-F-tWH-cWW-cWW-F-tSW-tWS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6I7O|1|2b|A|1336
6I7O|1|2b|A|1337
6I7O|1|2b|C|1338
*
6I7O|1|2b|G|1386
6I7O|1|2b|G|1387
6I7O|1|2b|A|1388
6I7O|1|2b|C|1389
6I7O|1|2b|U|1390
6I7O|1|2b|A|1391
*
6I7O|1|2b|U|1407
6I7O|1|2b|G|1408
6I7O|1|2b|G|1409
6I7O|1|2b|A|1410
6I7O|1|2b|A|1411
6I7O|1|2b|G|1412
6I7O|1|2b|U|1413
6I7O|1|2b|U|1414
6I7O|1|2b|U|1415
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Bb
- 40S ribosomal protein S5
- Chain Fb
- 40S ribosomal protein S16-A
- Chain Gb
- 40S ribosomal protein S17-A
- Chain Jb
- 40S ribosomal protein S20
- Chain Mb
- 40S ribosomal protein S29-A
- Chain Ob
- Guanine nucleotide-binding protein subunit beta-like protein
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